PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g032180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 233aa    MW: 25810.2 Da    PI: 7.9286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g032180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-1078125454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRdr+N++f eL  ll +    + +K +K++iL  Av+ + +L
  Sopen07g032180.1  78 SKACREKLRRDRLNDKFMELGALLEPG---RPPKTDKSAILVDAVRLVTQL 125
                       5678**********************8...89*************999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.70974125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1277145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-877130No hitNo description
Gene3DG3DSA:4.10.280.103.2E-1278147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-878125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-880131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSPESTNWL YDYGFEDSCV PDSNFSASAS GFNWSVQNLN GSRNVSSEID GSIGESDCPK  60
ESGSKKRARV ESCAPTSSKA CREKLRRDRL NDKFMELGAL LEPGRPPKTD KSAILVDAVR  120
LVTQLRDEAQ KLKDSNLNLQ EKIKELKVEK TELRDEKQRL KAEKEKLEQQ LKTTSAQPSY  180
LPPAIPSAFA AHGQFPGSKL VPIMSYPGVA MWQFMPPAAV DTSQDHVLRP PVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8802790.0EU880279.1 Nicotiana tabacum basic helix-loop-helix protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082751.11e-173PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-110ILR3_ARATH; Transcription factor ILR3
TrEMBLK4CH871e-171K4CH87_SOLLC; Uncharacterized protein
STRINGSolyc07g064040.2.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-97bHLH family protein